HL_6UZ7_127
3D structure
- PDB id
- 6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- K.lactis 80S ribosome with p/PE tRNA and eIF5B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAGCGAAUUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6UZ7_127 not in the Motif Atlas
- Geometric match to HL_5TBW_230
- Geometric discrepancy: 0.1354
- The information below is about HL_5TBW_230
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6UZ7|1|8|C|47
6UZ7|1|8|A|48
6UZ7|1|8|G|49
6UZ7|1|8|C|50
6UZ7|1|8|G|51
6UZ7|1|8|A|52
6UZ7|1|8|A|53
6UZ7|1|8|U|54
6UZ7|1|8|U|55
6UZ7|1|8|G|56
Current chains
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- 60S ribosomal protein L25
- Chain Bh
- KLLA0F05247p
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- 60S ribosomal protein L39
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