HL_6V39_012

3D structure

PDB id

6V39 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GCACGUGAAAC

Length

11 nucleotides

Bulged bases

6V39|1|AN1|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V39_012 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1565

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6V39|1|AN1|G|381
6V39|1|AN1|C|382
6V39|1|AN1|A|383
6V39|1|AN1|C|384
6V39|1|AN1|G|385
6V39|1|AN1|U|386
6V39|1|AN1|G|387
6V39|1|AN1|A|388
6V39|1|AN1|A|389
6V39|1|AN1|A|390
6V39|1|AN1|C|391

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L28