3D structure

PDB id
6V3A (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 70S with E-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.82 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6V3A_087 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.1925
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

6V3A|1|sN1|G|783
6V3A|1|sN1|A|784
6V3A|1|sN1|U|785
6V3A|1|sN1|U|786
6V3A|1|sN1|A|787
6V3A|1|sN1|G|788
6V3A|1|sN1|A|789
6V3A|1|sN1|U|790
6V3A|1|sN1|A|791
6V3A|1|sN1|C|792
6V3A|1|sN1|C|793

Current chains

Chain sN1
16s Ribosomal RNA

Nearby chains

Chain k
30S ribosomal protein S11
Chain u
30S ribosomal protein S21
Chain v
Transfer RNA; tRNA
Chain w
mRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.142 s