HL_6V3D_009

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUGGGAAG

Length

8 nucleotides

Bulged bases

6V3D|1|AN1|A|313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3D_009 not in the Motif Atlas

Geometric match to HL_7A0S_010

Geometric discrepancy: 0.1509

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

6V3D|1|AN1|C|307
6V3D|1|AN1|U|308
6V3D|1|AN1|G|309
6V3D|1|AN1|G|310
6V3D|1|AN1|G|311
6V3D|1|AN1|A|312
6V3D|1|AN1|A|313
6V3D|1|AN1|G|314

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L24