HL_6V3D_013

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6V3D|1|AN1|G|410

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3D_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1171

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6V3D|1|AN1|G|409
6V3D|1|AN1|G|410
6V3D|1|AN1|A|411
6V3D|1|AN1|C|412
6V3D|1|AN1|C|413
6V3D|1|AN1|A|414
6V3D|1|AN1|U|415
6V3D|1|AN1|C|416

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains