HL_6V3D_046

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

6V3D|1|AN1|U|1866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3D_046 not in the Motif Atlas

Homologous match to HL_5J7L_180

Geometric discrepancy: 0.5103

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6V3D|1|AN1|C|1864
6V3D|1|AN1|G|1865
6V3D|1|AN1|U|1866
6V3D|1|AN1|A|1867
6V3D|1|AN1|A|1868
6V3D|1|AN1|G|1869

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains