HL_6V3D_055
3D structure
- PDB id
- 6V3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- UAUAAAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6V3D_055 not in the Motif Atlas
- Homologous match to HL_5J7L_189
- Geometric discrepancy: 0.1533
- The information below is about HL_5J7L_189
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
6V3D|1|AN1|U|2320
6V3D|1|AN1|A|2321
6V3D|1|AN1|U|2322
6V3D|1|AN1|A|2323
6V3D|1|AN1|A|2324
6V3D|1|AN1|A|2325
6V3D|1|AN1|G|2326
6V3D|1|AN1|G|2327
Current chains
- Chain AN1
- 23s ribosomal RNA
Nearby chains
- Chain V
- 50S ribosomal protein L27
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