HL_6V3D_072

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

6V3D|1|AN1|U|955, 6V3D|1|AN1|C|958

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3D_072 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.1809

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6V3D|1|AN1|PSU|952
6V3D|1|AN1|G|953
6V3D|1|AN1|C|954
6V3D|1|AN1|U|955
6V3D|1|AN1|A|956
6V3D|1|AN1|A|957
6V3D|1|AN1|C|958
6V3D|1|AN1|G|959

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain L

50S ribosomal protein L16