HL_6V3D_073

3D structure

PDB id

6V3D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 50S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GUCGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6V3D_073 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.5511

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6V3D|1|AN1|G|2300
6V3D|1|AN1|U|2301
6V3D|1|AN1|C|2302
6V3D|1|AN1|G|2303
6V3D|1|AN1|G|2304
6V3D|1|AN1|A|2305
6V3D|1|AN1|A|2306
6V3D|1|AN1|A|2307
6V3D|1|AN1|U|2308

Current chains

Chain AN1

23s ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L5