HL_6VLZ_048

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

UUGUAAAAAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VLZ_048 not in the Motif Atlas

Geometric match to HL_4LFB_015

Geometric discrepancy: 0.397

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6VLZ|1|AA|U|989
6VLZ|1|AA|U|990
6VLZ|1|AA|G|991
6VLZ|1|AA|U|992
6VLZ|1|AA|A|993
6VLZ|1|AA|A|994
6VLZ|1|AA|A|995
6VLZ|1|AA|A|996
6VLZ|1|AA|A|997
6VLZ|1|AA|A|998

Current chains

Chain AA

12s rRNA

Nearby chains

Chain AF

28S ribosomal protein S7, mitochondrial

Chain AI

28S ribosomal protein S11, mitochondrial

Chain AQ

28S ribosomal protein S21, mitochondrial