HL_6VMY_003

3D structure

PDB id

6VMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis cobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUCCCGC

Length

7 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

30

Unit IDs

6VMY|1|A|G|268
6VMY|1|A|U|269
6VMY|1|A|C|270
6VMY|1|A|C|271
6VMY|1|A|C|272
6VMY|1|A|G|273
6VMY|1|A|C|274

Current chains

Chain A

B. subtilis cobalamin riboswitch

Nearby chains