HL_6VU3_049

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6VU3|1|a|G|386, 6VU3|1|a|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VU3_049 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.074

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6VU3|1|a|A|382
6VU3|1|a|C|383
6VU3|1|a|A|384
6VU3|1|a|C|385
6VU3|1|a|G|386
6VU3|1|a|U|387
6VU3|1|a|G|388
6VU3|1|a|G|389
6VU3|1|a|U|390
6VU3|1|a|A|391
6VU3|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28