HL_6VWL_020

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

6VWL|1|1|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_020 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1856

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6VWL|1|1|G|963
6VWL|1|1|A|964
6VWL|1|1|U|965
6VWL|1|1|G|966
6VWL|1|1|C|967
6VWL|1|1|A|968
6VWL|1|1|A|969
6VWL|1|1|C|970
6VWL|1|1|G|971
6VWL|1|1|C|972

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain h

30S ribosomal protein S9

Chain i

30S ribosomal protein S10

Chain l

30S ribosomal protein S13

Chain m

30S ribosomal protein S14