HL_6VWL_042

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6VWL|1|2|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWL_042 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.2636

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6VWL|1|2|A|382
6VWL|1|2|C|383
6VWL|1|2|A|384
6VWL|1|2|C|385
6VWL|1|2|G|386
6VWL|1|2|U|387
6VWL|1|2|G|388
6VWL|1|2|G|389
6VWL|1|2|U|390
6VWL|1|2|A|391
6VWL|1|2|U|392

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain V

50S ribosomal protein L28