HL_6VWM_041

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6VWM|1|2|G|386, 6VWM|1|2|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWM_041 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.3026

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6VWM|1|2|A|382
6VWM|1|2|C|383
6VWM|1|2|A|384
6VWM|1|2|C|385
6VWM|1|2|G|386
6VWM|1|2|U|387
6VWM|1|2|G|388
6VWM|1|2|G|389
6VWM|1|2|U|390
6VWM|1|2|A|391
6VWM|1|2|U|392

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AB

50S ribosomal protein L35

Chain V

50S ribosomal protein L28