HL_6VWM_093

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6VWM|1|2|G|2751, 6VWM|1|2|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWM_093 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1392

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6VWM|1|2|C|2745
6VWM|1|2|U|2746
6VWM|1|2|G|2747
6VWM|1|2|A|2748
6VWM|1|2|A|2749
6VWM|1|2|A|2750
6VWM|1|2|G|2751
6VWM|1|2|C|2752
6VWM|1|2|A|2753
6VWM|1|2|U|2754
6VWM|1|2|C|2755
6VWM|1|2|U|2756
6VWM|1|2|A|2757
6VWM|1|2|A|2758
6VWM|1|2|G|2759

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain H

50S ribosomal protein L13