HL_6VWN_005

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

6VWN|1|1|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_005 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.183

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6VWN|1|1|G|259
6VWN|1|1|G|260
6VWN|1|1|U|261
6VWN|1|1|A|262
6VWN|1|1|A|263
6VWN|1|1|C|264
6VWN|1|1|G|265
6VWN|1|1|G|266
6VWN|1|1|C|267

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S17

Chain s

30S ribosomal protein S20