HL_6VWN_023

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6VWN|1|1|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_023 not in the Motif Atlas

Homologous match to HL_6CZR_096

Geometric discrepancy: 0.2519

The information below is about HL_6CZR_096

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6VWN|1|1|G|1089
6VWN|1|1|U|1090
6VWN|1|1|U|1091
6VWN|1|1|A|1092
6VWN|1|1|A|1093
6VWN|1|1|G|1094
6VWN|1|1|U|1095
6VWN|1|1|C|1096

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain a

30S ribosomal protein S2

Chain t

30S ribosomal protein S21