HL_6VWN_031

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

6VWN|1|2|G|60

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_031 not in the Motif Atlas

Homologous match to HL_7A0S_001

Geometric discrepancy: 0.5306

The information below is about HL_7A0S_001

Detailed Annotation

Pseudoknot with intercalation

Broad Annotation

No text annotation

Motif group

HL_93438.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6VWN|1|2|U|59
6VWN|1|2|G|60
6VWN|1|2|C|61
6VWN|1|2|U|62
6VWN|1|2|A|63
6VWN|1|2|A|64
6VWN|1|2|U|65
6VWN|1|2|C|66
6VWN|1|2|U|67
6VWN|1|2|G|68

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L23

Chain W

50S ribosomal protein L29