HL_6VWN_042

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6VWN|1|2|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_042 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.0914

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6VWN|1|2|G|410
6VWN|1|2|G|411
6VWN|1|2|A|412
6VWN|1|2|C|413
6VWN|1|2|C|414
6VWN|1|2|A|415
6VWN|1|2|U|416
6VWN|1|2|C|417

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L15