HL_6VWN_075

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6VWN|1|2|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_075 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1768

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6VWN|1|2|G|1910
6VWN|1|2|U|1911
6VWN|1|2|A|1912
6VWN|1|2|A|1913
6VWN|1|2|C|1914
6VWN|1|2|U|1915
6VWN|1|2|A|1916
6VWN|1|2|U|1917
6VWN|1|2|A|1918
6VWN|1|2|A|1919
6VWN|1|2|C|1920

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain 4

HIV ribosomal frameshift signal