HL_6VWN_076

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6VWN|1|2|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_076 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1101

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6VWN|1|2|G|1949
6VWN|1|2|G|1950
6VWN|1|2|U|1951
6VWN|1|2|A|1952
6VWN|1|2|A|1953
6VWN|1|2|G|1954
6VWN|1|2|U|1955
6VWN|1|2|U|1956
6VWN|1|2|C|1957

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain I

50S ribosomal protein L14