HL_6VWN_081

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6VWN|1|2|A|2268, 6VWN|1|2|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_081 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1092

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6VWN|1|2|C|2264
6VWN|1|2|U|2265
6VWN|1|2|A|2266
6VWN|1|2|A|2267
6VWN|1|2|A|2268
6VWN|1|2|G|2269
6VWN|1|2|A|2270
6VWN|1|2|G|2271
6VWN|1|2|U|2272
6VWN|1|2|A|2273
6VWN|1|2|A|2274
6VWN|1|2|C|2275
6VWN|1|2|G|2276

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27