HL_6VWN_084
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGACGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VWN_084 not in the Motif Atlas
- Homologous match to HL_5J7L_190
- Geometric discrepancy: 0.085
- The information below is about HL_5J7L_190
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
6VWN|1|2|U|2356
6VWN|1|2|G|2357
6VWN|1|2|A|2358
6VWN|1|2|C|2359
6VWN|1|2|G|2360
6VWN|1|2|G|2361
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain AB
- 50S ribosomal protein L35
- Chain J
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L27
Coloring options: