HL_6VWN_088
3D structure
- PDB id
- 6VWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGAAGUAG
- Length
- 8 nucleotides
- Bulged bases
- 6VWN|1|2|G|2529
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VWN_088 not in the Motif Atlas
- Homologous match to HL_5J7L_194
- Geometric discrepancy: 0.1485
- The information below is about HL_5J7L_194
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_31585.4
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 20
Unit IDs
6VWN|1|2|U|2528
6VWN|1|2|G|2529
6VWN|1|2|A|2530
6VWN|1|2|A|2531
6VWN|1|2|G|2532
6VWN|1|2|U|2533
6VWN|1|2|A|2534
6VWN|1|2|G|2535
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain AC
- 50S ribosomal protein L36
- Chain E
- 50S ribosomal protein L6
Coloring options: