3D structure

PDB id
6VWN (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
6VWN|1|2|G|2751, 6VWN|1|2|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VWN_093 not in the Motif Atlas
Homologous match to HL_5J7L_199
Geometric discrepancy: 0.1321
The information below is about HL_5J7L_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

6VWN|1|2|C|2745
6VWN|1|2|U|2746
6VWN|1|2|G|2747
6VWN|1|2|A|2748
6VWN|1|2|A|2749
6VWN|1|2|A|2750
6VWN|1|2|G|2751
6VWN|1|2|C|2752
6VWN|1|2|A|2753
6VWN|1|2|U|2754
6VWN|1|2|C|2755
6VWN|1|2|U|2756
6VWN|1|2|A|2757
6VWN|1|2|A|2758
6VWN|1|2|G|2759

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain AC
50S ribosomal protein L36
Chain E
50S ribosomal protein L6
Chain G
50S ribosomal protein L13

Coloring options:


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