HL_6VWN_093

3D structure

PDB id

6VWN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6VWN|1|2|G|2751, 6VWN|1|2|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VWN_093 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1321

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6VWN|1|2|C|2745
6VWN|1|2|U|2746
6VWN|1|2|G|2747
6VWN|1|2|A|2748
6VWN|1|2|A|2749
6VWN|1|2|A|2750
6VWN|1|2|G|2751
6VWN|1|2|C|2752
6VWN|1|2|A|2753
6VWN|1|2|U|2754
6VWN|1|2|C|2755
6VWN|1|2|U|2756
6VWN|1|2|A|2757
6VWN|1|2|A|2758
6VWN|1|2|G|2759

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13