HL_6VYR_023
3D structure
- PDB id
- 6VYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 18 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6VYR|1|D|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VYR_023 not in the Motif Atlas
- Homologous match to HL_5J7L_017
- Geometric discrepancy: 0.0738
- The information below is about HL_5J7L_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6VYR|1|D|G|786
6VYR|1|D|A|787
6VYR|1|D|U|788
6VYR|1|D|U|789
6VYR|1|D|A|790
6VYR|1|D|G|791
6VYR|1|D|A|792
6VYR|1|D|U|793
6VYR|1|D|A|794
6VYR|1|D|C|795
6VYR|1|D|C|796
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain 7
- mRNA with 18 nt long spacer
- Chain A
- Transfer RNA; tRNA
- Chain B
- Transfer RNA; tRNA
- Chain F
- 30S ribosomal protein S21
- Chain Q
- 30S ribosomal protein S11
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
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