HL_6VYS_049

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6VYS|1|a|G|386, 6VYS|1|a|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYS_049 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0741

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6VYS|1|a|A|382
6VYS|1|a|C|383
6VYS|1|a|A|384
6VYS|1|a|C|385
6VYS|1|a|G|386
6VYS|1|a|U|387
6VYS|1|a|G|388
6VYS|1|a|G|389
6VYS|1|a|U|390
6VYS|1|a|A|391
6VYS|1|a|U|392

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28