HL_6VYT_012
3D structure
- PDB id
- 6VYT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 14 Å
Loop
- Sequence
- GGUAACGGC
- Length
- 9 nucleotides
- Bulged bases
- 6VYT|1|D|G|266
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VYT_012 not in the Motif Atlas
- Homologous match to HL_5J7L_006
- Geometric discrepancy: 0.0793
- The information below is about HL_5J7L_006
- Detailed Annotation
- GNRA related
- Broad Annotation
- GNRA related
- Motif group
- HL_84299.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
6VYT|1|D|G|259
6VYT|1|D|G|260
6VYT|1|D|U|261
6VYT|1|D|A|262
6VYT|1|D|A|263
6VYT|1|D|C|264
6VYT|1|D|G|265
6VYT|1|D|G|266
6VYT|1|D|C|267
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S20
- Chain V
- 30S ribosomal protein S17
Coloring options: