HL_6VYT_052

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

6VYT|1|a|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYT_052 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.0597

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6VYT|1|a|C|487
6VYT|1|a|G|488
6VYT|1|a|G|489
6VYT|1|a|C|490
6VYT|1|a|G|491
6VYT|1|a|A|492
6VYT|1|a|G|493

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L22