HL_6VYT_096

3D structure

PDB id

6VYT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A2 (TTC-A2) containing a 15 nt long mRNA spacer, NusG, and fMet-tRNAs at P-site and E-site

Experimental method

ELECTRON MICROSCOPY

Resolution

14 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

6VYT|1|a|A|2406

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYT_096 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0592

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6VYT|1|a|U|2404
6VYT|1|a|G|2405
6VYT|1|a|A|2406
6VYT|1|a|A|2407
6VYT|1|a|U|2408
6VYT|1|a|G|2409
6VYT|1|a|G|2410
6VYT|1|a|A|2411
6VYT|1|a|A|2412
6VYT|1|a|G|2413

Current chains

Chain a

23S rRNA

Nearby chains

Chain u

50S ribosomal protein L15