HL_6VYU_014

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYU_014 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0648

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6VYU|1|D|A|320
6VYU|1|D|A|321
6VYU|1|D|C|322
6VYU|1|D|U|323
6VYU|1|D|G|324
6VYU|1|D|A|325
6VYU|1|D|G|326
6VYU|1|D|A|327
6VYU|1|D|C|328
6VYU|1|D|A|329
6VYU|1|D|C|330
6VYU|1|D|G|331
6VYU|1|D|G|332
6VYU|1|D|U|333

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16