HL_6VYU_015

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

6VYU|1|D|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYU_015 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1269

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6VYU|1|D|C|342
6VYU|1|D|U|343
6VYU|1|D|A|344
6VYU|1|D|C|345
6VYU|1|D|G|346
6VYU|1|D|G|347

Current chains

Chain D

16S rRNA

Nearby chains

Chain t

50S ribosomal protein L14

Chain y

50S ribosomal protein L19