HL_6VYU_016
3D structure
- PDB id
- 6VYU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7 Å
Loop
- Sequence
- CGCAAG
- Length
- 6 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VYU_016 not in the Motif Atlas
- Homologous match to HL_5J7L_010
- Geometric discrepancy: 0.07
- The information below is about HL_5J7L_010
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_85603.1
- Basepair signature
- cWW-tSH-F-F
- Number of instances in this motif group
- 304
Unit IDs
6VYU|1|D|C|379
6VYU|1|D|G|380
6VYU|1|D|C|381
6VYU|1|D|A|382
6VYU|1|D|A|383
6VYU|1|D|G|384
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain U
- 30S ribosomal protein S16
Coloring options: