3D structure

PDB id
6VYU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
7 Å

Loop

Sequence
CGGCGAG
Length
7 nucleotides
Bulged bases
6VYU|1|a|C|490
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VYU_052 not in the Motif Atlas
Homologous match to HL_5J7L_148
Geometric discrepancy: 0.0598
The information below is about HL_5J7L_148
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

6VYU|1|a|C|487
6VYU|1|a|G|488
6VYU|1|a|G|489
6VYU|1|a|C|490
6VYU|1|a|G|491
6VYU|1|a|A|492
6VYU|1|a|G|493

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.238 s