HL_6VYU_085

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GAACAAAC

Length

8 nucleotides

Bulged bases

6VYU|1|a|A|1913, 6VYU|1|a|C|1914

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYU_085 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.4297

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6VYU|1|a|G|1910
6VYU|1|a|A|1912
6VYU|1|a|A|1913
6VYU|1|a|C|1914
6VYU|1|a|A|1916
6VYU|1|a|A|1918
6VYU|1|a|A|1919
6VYU|1|a|C|1920

Current chains

Chain a

23S rRNA

Nearby chains

Chain B

Transfer RNA; tRNA

Chain D

Small subunit ribosomal RNA; SSU rRNA