HL_6VYU_086

3D structure

PDB id

6VYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C2 (TTC-C2) containing a 27 nt long mRNA spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6VYU|1|a|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYU_086 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0628

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6VYU|1|a|G|1949
6VYU|1|a|G|1950
6VYU|1|a|U|1951
6VYU|1|a|A|1952
6VYU|1|a|A|1953
6VYU|1|a|G|1954
6VYU|1|a|U|1955
6VYU|1|a|U|1956
6VYU|1|a|C|1957

Current chains

Chain a

23S rRNA

Nearby chains

Chain D

Small subunit ribosomal RNA; SSU rRNA

Chain t

50S ribosomal protein L14