HL_6VYW_040

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

6VYW|1|a|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYW_040 not in the Motif Atlas

Homologous match to HL_5J7L_136

Geometric discrepancy: 0.0749

The information below is about HL_5J7L_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6VYW|1|a|G|123
6VYW|1|a|G|124
6VYW|1|a|A|125
6VYW|1|a|A|126
6VYW|1|a|A|127
6VYW|1|a|C|128

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23

Chain m

50S ribosomal protein L34