HL_6VYW_088

3D structure

PDB id

6VYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C3 (TTC-C3) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

7 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

6VYW|1|a|C|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYW_088 not in the Motif Atlas

Homologous match to HL_5J7L_184

Geometric discrepancy: 0.3341

The information below is about HL_5J7L_184

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79299.1

Basepair signature

cWW-tSW-R

Number of instances in this motif group

44

Unit IDs

6VYW|1|a|C|2143
6VYW|1|a|G|2144
6VYW|1|a|C|2145
6VYW|1|a|C|2146
6VYW|1|a|A|2147
6VYW|1|a|G|2148

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Transfer RNA; tRNA