HL_6VYY_027

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

GAUAACGC

Length

8 nucleotides

Bulged bases

6VYY|1|D|A|968, 6VYY|1|D|G|971

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYY_027 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.1797

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6VYY|1|D|G|963
6VYY|1|D|A|964
6VYY|1|D|U|965
6VYY|1|D|A|968
6VYY|1|D|A|969
6VYY|1|D|C|970
6VYY|1|D|G|971
6VYY|1|D|C|972

Current chains

Chain D

16S rRNA

Nearby chains

Chain O

30S ribosomal protein S9

Chain P

30S ribosomal protein S10