HL_6VYY_072

3D structure

PDB id

6VYY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex C5 (TTC-C5) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

9.9 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6VYY|1|a|A|1453, 6VYY|1|a|C|1454

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VYY_072 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1665

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6VYY|1|a|C|1451
6VYY|1|a|G|1452
6VYY|1|a|A|1453
6VYY|1|a|C|1454
6VYY|1|a|G|1455
6VYY|1|a|G|1456
6VYY|1|a|U|1457
6VYY|1|a|U|1458
6VYY|1|a|G|1459

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L17