HL_6VZ3_002
3D structure
- PDB id
- 6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VZ3_002 not in the Motif Atlas
- Homologous match to HL_5UD5_002
- Geometric discrepancy: 0.3333
- The information below is about HL_5UD5_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6VZ3|1|A|G|31
6VZ3|1|A|C|32
6VZ3|1|A|U|33
6VZ3|1|A|C|34
6VZ3|1|A|A|35
6VZ3|1|A|U|36
6VZ3|1|A|A|37
6VZ3|1|A|A|38
6VZ3|1|A|C|39
Current chains
- Chain A
- E-site tRNA (fMet)
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain M
- 30S ribosomal protein S7
- Chain Q
- 30S ribosomal protein S11
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