HL_6VZ3_014
3D structure
- PDB id
- 6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- AACUGAGACACGGU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VZ3_014 not in the Motif Atlas
- Homologous match to HL_5J7L_008
- Geometric discrepancy: 0.0648
- The information below is about HL_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81205.3
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6VZ3|1|D|A|320
6VZ3|1|D|A|321
6VZ3|1|D|C|322
6VZ3|1|D|U|323
6VZ3|1|D|G|324
6VZ3|1|D|A|325
6VZ3|1|D|G|326
6VZ3|1|D|A|327
6VZ3|1|D|C|328
6VZ3|1|D|A|329
6VZ3|1|D|C|330
6VZ3|1|D|G|331
6VZ3|1|D|G|332
6VZ3|1|D|U|333
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain E
- 30S ribosomal protein S20
- Chain U
- 30S ribosomal protein S16
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