HL_6VZ3_020

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZ3_020 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.081

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6VZ3|1|D|G|617
6VZ3|1|D|C|618
6VZ3|1|D|U|619
6VZ3|1|D|C|620
6VZ3|1|D|A|621
6VZ3|1|D|A|622
6VZ3|1|D|C|623

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4

Chain U

30S ribosomal protein S16