HL_6VZ3_028

3D structure

PDB id

6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZ3_028 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.2743

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

6VZ3|1|D|A|1012
6VZ3|1|D|G|1013
6VZ3|1|D|A|1014
6VZ3|1|D|G|1015
6VZ3|1|D|A|1016
6VZ3|1|D|U|1017

Current chains

Chain D

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S14

Chain W

30S ribosomal protein S19