3D structure

PDB id
6VZ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex D2 (TTC-D2) containing mRNA with a 27 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
8.9 Å

Loop

Sequence
CGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6VZ3_051 not in the Motif Atlas
Homologous match to HL_5J7L_147
Geometric discrepancy: 0.0589
The information below is about HL_5J7L_147
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

6VZ3|1|a|C|462
6VZ3|1|a|G|463
6VZ3|1|a|U|464
6VZ3|1|a|G|465
6VZ3|1|a|A|466
6VZ3|1|a|G|467

Current chains

Chain a
23S rRNA

Nearby chains

Chain l
50S ribosomal protein L4
Chain m
50S ribosomal protein L34

Coloring options:


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