HL_6VZ5_014

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZ5_014 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0647

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6VZ5|1|D|A|320
6VZ5|1|D|A|321
6VZ5|1|D|C|322
6VZ5|1|D|U|323
6VZ5|1|D|G|324
6VZ5|1|D|A|325
6VZ5|1|D|G|326
6VZ5|1|D|A|327
6VZ5|1|D|C|328
6VZ5|1|D|A|329
6VZ5|1|D|C|330
6VZ5|1|D|G|331
6VZ5|1|D|G|332
6VZ5|1|D|U|333

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20

Chain U

30S ribosomal protein S16