HL_6VZ5_021
3D structure
- PDB id
- 6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VZ5_021 not in the Motif Atlas
- Homologous match to HL_5J7L_015
- Geometric discrepancy: 0.0654
- The information below is about HL_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.5
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6VZ5|1|D|C|689
6VZ5|1|D|G|690
6VZ5|1|D|G|691
6VZ5|1|D|U|692
6VZ5|1|D|G|693
6VZ5|1|D|A|694
6VZ5|1|D|A|695
6VZ5|1|D|A|696
6VZ5|1|D|U|697
6VZ5|1|D|G|698
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain A
- Transfer RNA; tRNA
- Chain F
- 30S ribosomal protein S21
- Chain M
- 30S ribosomal protein S7
- Chain Q
- 30S ribosomal protein S11
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