HL_6VZ5_048
3D structure
- PDB id
- 6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 6VZ5|1|a|G|329, 6VZ5|1|a|A|330, 6VZ5|1|a|C|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6VZ5_048 not in the Motif Atlas
- Homologous match to HL_5J7L_144
- Geometric discrepancy: 0.0755
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
6VZ5|1|a|G|327
6VZ5|1|a|U|328
6VZ5|1|a|G|329
6VZ5|1|a|A|330
6VZ5|1|a|C|331
6VZ5|1|a|A|332
6VZ5|1|a|G|333
6VZ5|1|a|C|334
6VZ5|1|a|C|335
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L24
- Chain l
- 50S ribosomal protein L4
Coloring options: