HL_6VZ5_073

3D structure

PDB id

6VZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D3 (TTC-D3) containing mRNA with a 21 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6VZ5|1|a|A|1453, 6VZ5|1|a|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6VZ5_073 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.1664

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6VZ5|1|a|C|1451
6VZ5|1|a|G|1452
6VZ5|1|a|A|1453
6VZ5|1|a|C|1454
6VZ5|1|a|G|1455
6VZ5|1|a|G|1456
6VZ5|1|a|U|1457
6VZ5|1|a|U|1458
6VZ5|1|a|G|1459

Current chains

Chain a

23S rRNA

Nearby chains

Chain w

50S ribosomal protein L17